=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.13.0nb3 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=5,6 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=5,6 all_r; \ fi gmake[1]: warning: -j3 forced in submake: resetting jobserver mode. gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' Build session ID: 8E2B0F9A-86C0-420D-959E-DF509D2308E6 /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/gui/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/sample/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/ctools/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/internal/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT ctools/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT gui/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sample/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/jaeger/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT jaeger/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib TMPL=corelib -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib TMPL=test_mt -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib TMPL=corelib -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information Updating dependency information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_fast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_os_unix.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag.cpp:880:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbidiag.hpp:1827:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag.cpp:3592:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiapp_api.hpp:395:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidll.cpp:226:25: warning: 'NSLookupSymbolInModule' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] NSSymbol nssymbol = NSLookupSymbolInModule(module, name.c_str()); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:200:17: note: 'NSLookupSymbolInModule' has been explicitly marked deprecated here extern NSSymbol NSLookupSymbolInModule(NSModule module, const char* symbolName) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidll.cpp:228:11: warning: 'NSAddressOfSymbol' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] ptr = NSAddressOfSymbol(nssymbol); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:207:21: note: 'NSAddressOfSymbol' has been explicitly marked deprecated here extern void * NSAddressOfSymbol(NSSymbol symbol) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ 2 warnings generated. /ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-regis/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbifile.cpp:5160:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ 2 warnings generated. ter -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work1 warning generated. /ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -WaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbitime.cpp:32: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbitime.hpp:1926:13: warning: private field 'm_Daylight' is not used [-Wunused-private-field] int m_Daylight; ///< Cached system daylight information ^ 1 warning generated. ll -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/syslog.cpp -o syslog.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common 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-DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib TMPL=test_mt -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/image/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/qparse/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/diff/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/demo/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT diff/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/qparse/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util TMPL=util -w -j3 --jobserver-auth=9,10 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util TMPL=util -w -j3 --jobserver-auth=9,10 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/crc32_sse.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/cache_async.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/md5.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/random_gen.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/format_guess.cpp -o format_guess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/ascii85.cpp -o ascii85.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/dictionary_util.cpp:728:20: warning: unused function 's_ReplaceEnding' [-Wunused-function] static inline bool s_ReplaceEnding(string& word, ^ 1 warning generated. 1 warning generated. last+/work/ncbi-blast-2.13.0+-src/c++/src/util/dictionary.cpp -o dictionary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include 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-I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/cache_async.cpp -o cache_async.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/regexp TMPL=regexp -w -j3 --jobserver-auth=13,14 mark-as-disabled gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp TMPL=xregexp -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp TMPL=xregexp -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/regexp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C bzip2 -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/zlib TMPL=zlib -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api TMPL=compress -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api TMPL=compress -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/compress.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables TMPL=tables -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables TMPL=tables -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil TMPL=sequtil -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil TMPL=sequtil -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biol1 warning generated. ogy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/bitset/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/profile TMPL=utrtprof -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/profile TMPL=utrtprof -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/daemons/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ext/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/daemons/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT ext/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT daemons/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/ext/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=connssl -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=connect -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xxconnect -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xconnect -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xthrserv -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=connssl -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_msg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ecdh.c. 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/nc/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libconnssl.a(ssl_tls13_keys.o) has no symbols bi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=connect -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbdns.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FIL/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c:2972:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c:3009:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c:2972:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c:2963:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 E_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_I1 warning generated. D=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT 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-DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namerd.c:979:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] verify(arg = ConnNetInfo_GetArgs(net_info)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_assert.h:49:33: note: expanded from macro 'verify' # define verify(expr) while ( expr ) break ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namerd.c:979:16: note: place parentheses around the assignment to silence this warning verify(arg = ConnNetInfo_GetArgs(net_info)); ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_assert.h:49:33: note: expanded from macro 'verify' # define verify(expr) while ( expr ) break ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namerd.c:979:16: note: use '==' to turn this assignment into an equality comparison verify(arg = ConnNetInfo_GetArgs(net_info)); ^ == /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_assert.h:49:33: note: expanded from macro 'verify' # define verify(expr) while ( expr ) break ^ 1 warning generated. register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/parson.c -o parson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xxconnect -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/connect_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall 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-I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxxconnect.a(ssl_tls13_keys.o) has no symbols fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xconnect -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: 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'/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect TMPL=xthrserv -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/threaded_server.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=xconnserv -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=xconnserv -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/grid_worker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/test' /opt/pkg/bin/gmake -C daemons -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi TMPL=cgi -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi TMPL=fcgi -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi TMPL=cgi -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbicgi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi TMPL=fcgi -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html TMPL=html -w -j3 --jobserver-auth=9,10 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html TMPL=html -w -j3 --jobserver-auth=9,10 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/pager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C helpers -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/soap/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT soap/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/soap/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial TMPL=serial -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial TMPL=cserial -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial TMPL=serial -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/hookdata.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/iIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectiter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectio.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectio.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. nclude -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typeref.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/enumerated.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ 1 warning generated. 1 warning generated. 18 warnings generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/continfo.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stltypes.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/memberid.cpp -o memberid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/memberlist.cpp -o memberlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/item.cpp -o item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfob.cpp -o classinfob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfob.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/member.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/variant.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choiceptr.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choice.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. bi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/member.cpp -o member.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/classinfo.cpp -o classinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choice.cpp -o choice.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistr.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostr.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objcopy.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objcopy.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/iterator.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistr.cpp -o objistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostr.cpp -o objostr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objcopy.cpp -o objcopy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/iterator.cpp -o iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serial.cpp -o serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-21 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serial.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/delaybuf.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/exception.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objhook.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. .13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/pack_string.cpp -o pack_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/exception.cpp -o exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objhook.cpp -o objhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objlist.cpp -o objlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objstack.cpp -o objstack.o /Users/pbulk/build/biology/ncbi-blast+/work/.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasn.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasn.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrxml.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrxml.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serialobject.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serializable.cpp -o serializable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serialobject.cpp -o serialobject.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/p1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/rpcbase.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial TMPL=cserial -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/asntypes.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool TMPL=datatool -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/wsdlstr.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/datatool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. -blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool 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-Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/lang_bind/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT simple/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi TMPL=dbapi -w -j3 --jobserver-auth=9,10 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi TMPL=dbapi -w -j3 --jobserver-auth=9,10 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/variant.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/w/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ ork/ncbi-blast-2.13.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-c1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ommon -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/samples/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT ctlib/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT ftds-default/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT mysql/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/public.cpp -o public.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/types.cpp -o types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j3 --jobserver-auth=14,16" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.21.0 gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.21.0 gmake[5]: Leaving dgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. irectory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Usgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. logy/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-srcgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biologygmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/bugmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ild/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/srcgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdbgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blagmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. st-2.13.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blasgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. t-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast-2.13.0+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-srcgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objecgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ts/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/wogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. rk/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Usgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. logy/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blagmake[5]: warning: -j3 forced in submake: resetting jobserver mode. st+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. Warning: (810.1) No service name provided for CTrackMgrClient ects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulkgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=14,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh general all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general TMPL=general -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general TMPL=general -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio TMPL=biblio -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio TMPL=biblio -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline TMPL=medline -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline TMPL=medline -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub TMPL=pub -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub TMPL=pub -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode TMPL=seqcode -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode TMPL=seqcode -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biogmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. logy/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/generalgmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. .asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq TMPL=seq -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq TMPL=seq -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biologIn file included from seqblock__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1728:42: warning: overlapping comparisons always evaluate to true [-Wtautological-overlap-compare] if ( type != CSeq_loc::e_Pnt || type != CSeq_loc::e_Int ) { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. In file included from seqres__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. y/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REIn file included from seqtable__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from seqalign___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqblock___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/wo1 warning generated. In file included from seqfeat___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqres___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqtable___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. rk/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-regIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field] int m_dummy; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field] int m_dummy; ^ 2 warnings generated. 1 warning generated. ister -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset TMPL=seqset -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset TMPL=seqset -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit TMPL=submit -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit TMPL=submit -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit TMPL=seqedit -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit TMPL=seqedit -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1 TMPL=id1 -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1 TMPL=id1cli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1 TMPL=id1 -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1 TMPL=id1cli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2 TMPL=id2 -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2 TMPL=id2cli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2 TMPL=id2 -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] replies = move(ProcessSomeRequests(packet)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 2 warnings generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2 TMPL=id2cli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed TMPL=pubmed -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed TMPL=pubmed -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars TMPL=medlars -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars TMPL=medlars -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla TMPL=mla -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla TMPL=mlacli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla TMPL=mla -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla TMPL=mlacli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mla/mla_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj TMPL=proj -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj TMPL=proj -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat TMPL=scoremat -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat TMPL=scoremat -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast TMPL=blast -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast TMPL=blast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/names.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb TMPL=blastdb -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb TMPL=blastdb -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml TMPL=blastxml -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml TMPL=blastxml -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -w -j3 --jobserver-auth=16,18 -f /Usegmake[6]: warning: -j3 forced in submake: resetting jobserver mode. rs/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb TMPL=mmdb -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb TMPL=mmdb -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from mmdb1__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb2__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/buil1 warning generated. In file included from mmdb1___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb2___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. d/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d TMPL=cn3d -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d TMPL=cn3d -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd TMPL=cdd -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd TMPL=cdd -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay TMPL=pcassay -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay TMPL=pcassay -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.21.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq TMPL=gbseq -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq TMPL=gbseq -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq TMPL=insdseq -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq TMPL=insdseq -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree TMPL=biotree -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree TMPL=biotree -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree__.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/DistanceMatrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biotree/DistanceMatrix.hpp:46: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree___.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/DistanceMatrix_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biotree/DistanceMatrix.hpp:46: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa TMPL=omssa -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa TMPL=omssa -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap TMPL=remap -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap TMPL=remapcli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap TMPL=remap -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap TMPL=remapcli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest TMPL=seqtest -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest TMPL=seqtest -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++1In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. 7 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj TMPL=gbproj -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj TMPL=gbproj -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj___.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj__.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/DummyObsoleteType.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 3 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/tms_exception.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. +/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr TMPL=valerr -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr TMPL=valerr -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh valid all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid TMPL=valid -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid TMPL=valid -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh access all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access TMPL=access -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access TMPL=access -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum TMPL=docsum -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum TMPL=docsum -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef TMPL=featdef -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef TMPL=featdef -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 83074 (make_asn) gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/biolo1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::basic_string::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 1 warning generated. 2 warnings generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:278:35: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] if (args["retries"]) service->SetRetryLimit(args["retries"].AsInteger()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene TMPL=homologene -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene TMPL=homologene -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim TMPL=mim -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim TMPL=mim -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt TMPL=objprt -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt TMPL=objprt -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.21.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation TMPL=variation -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation TMPL=variation -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro TMPL=macro -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro TMPL=macro -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp:11: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Apply_table_extra_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp:6: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Add_file_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Fix_format_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Fix_sets_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Pub_field_speci_const_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Fix_format_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Fix_sets_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 5 warnings generated. 5 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating Updating dependency information for dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.21.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords TMPL=objcoords -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords TMPL=objcoords -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=11,12 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.21.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep TMPL=varrep -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep TMPL=varrep -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep__.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/NtSite.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep___.cpp:17: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/NtIntLimit_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C dbsnp -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C search_by_rsid -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=15,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.21.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -w -j3 --jobserver-auth=15,16 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.21.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C primary_track -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr TMPL=objmgr -w -j3 --jobserver-auth=9,10 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr TMPL=objmgr -w -j3 --jobserver-auth=9,10 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_setters.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_setters.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_table_setters.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/feat_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-42In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 0D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. rings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/priority.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. iology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope.cpp -o scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/prefetch_actions.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/heap_scope.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. +-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_annot_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/align_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. st+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/object_manager.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 2 warnings generated. lang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/includIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_type_index.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_type_index.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. e/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-4In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader_factory.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_graph_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqres/Seq_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqres/Seq_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 20D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wa1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_align_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. ll -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythonIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/incl1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edits_db_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/edits_db_saver.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_finder.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split_parser.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ude -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util TMPL=util -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util TMPL=util -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/weight.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-depreIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/weight.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/indexer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/create_defline.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/MolInfo.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/MolInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/buildIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/obj_sniff.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:52:9: warning: private field 'm_dummy' is not used [-Wunused-private-field] int m_dummy; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/objutil.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 1 warning generated. 1 warning generated. blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-registerIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split TMPL=id2_split -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split TMPL=id2_split -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/woIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/blob_splitter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. rk/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/object_splitinfo.cpp -o oIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/annot_piece.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/chunk_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/place_id.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/size.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. bject_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/unit_test_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/lds2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cddalignview/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/validator/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/manip/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/validator/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/asniotest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/asniotest/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/snputil/Makefile.in test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/flatfile/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test_util/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/import/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/flatfile/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/manip/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/validator/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT asniotest/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT uudutil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT import/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging TMPL=logging -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging TMPL=logging -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging/message.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/app/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT app/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers TMPL=xobjread -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers TMPL=xobjread -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_message.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/readIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/seqid_validate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. er_message_handler.cpp -o reader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/agp_read.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. kg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/alnread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_errors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blas1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/aln_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. t+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -WnoIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OF1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/getfeature.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/getfeature.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/featuredump.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/track_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. FSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/phrap.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/microarray_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_base.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/readfeat.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/rm_reader.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Annotdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Annotdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. /work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/bioloIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/so_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-reIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gff2_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gvf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/vcf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gister -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_column_data.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_column_data.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/bed_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. aseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/wor1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_exception.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta_exception.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_converter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/agp_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. k/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -W1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/message_listener.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. no-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pk1 warning generated. 1 warning generated. g/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/nc1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_database.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. bi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. =8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bla1 warning generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. 1 warning generated. st-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:172:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. 1 warning generated. d=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1341:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:661:9: warning: unused variable 'len' [-Wunused-variable] int len = short_id.size(); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/b2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. iology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-s1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/seqloc__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] int iflags = CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 1 warning generated. 1 warning generated. rc/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/services/blast_services.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT diag/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT protobuf/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /opt/pkg/bin/gmake -C diag -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag' /opt/pkg/bin/gmake -C cassandra -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT patcher/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT asn_cache/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT pubseq/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT pubseq2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. de/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNA1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. L -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/incl1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ude -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbi-bla1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. st+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp ar cr libncbi_xreader_id2.a reader_id2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp ar cr libncbi_xreader_id1.a reader_id1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j3 --jobserver-auth=15,16 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 2 warnings generated. 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_container.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 1 warning generated. 1 warning generated. 6 warnings generated. -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 3 warnings generated. 1 warning generated. bi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/sr1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) 1 warning generated. 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alntext.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. c/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/p1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ython3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File elink.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink TMPL=elink -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink TMPL=elink -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File epost.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost TMPL=epost -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost TMPL=epost -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell TMPL=espell -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell TMPL=espell -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -w -j3 --jobserver-auth=13,14 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.21.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C api -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api TMPL=eutils -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api TMPL=eutils -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/einfo.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/efetch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/ehistory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/eutils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/esearch.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/egquery.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/epost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. -common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/esummary.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/elink.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/espell.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit TMPL=edit -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit TMPL=edit -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/promote.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:964:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2481:17: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2481:17: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/field_handler.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. blast-2.13.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gene_utils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/b1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/apply_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/string_constraint.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. in/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_desc_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gb_block_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/cds_fix.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/loc_edit.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. SET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/mail_report.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/mail_report.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtable/Seq_table.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqtable/Seq_table_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gaps_edit.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/source_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/source_edit.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapp1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/remote_updater.cpp:340:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/remote_updater.hpp:109:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/remote_updater.cpp:583:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/remote_updater.hpp:107:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/edit/gap_trim.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/external_annots.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feature_propagate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Cdregion.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Cdregion_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. er/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_object_description.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. .13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.oIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format TMPL=xformat -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format TMPL=xformat -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/accession_item.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/accession_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/comment_item.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/basecount_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/contig_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Delta_ext.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Delta_ext_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/date_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/dbsource_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/feature_item.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/defline_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ctrl_items.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/keywords_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/PIR_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/PIR_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/locus_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. bi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/bu1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/primary_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/reference_item.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/segment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sequence_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ild/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/source_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/GB_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqblock/GB_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/version_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/wgs_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/tsa_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/qualifiers.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biol/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/context.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_items.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_generator.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. ogy/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_form1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/Cit_book.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/biblio/Cit_book_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/format_item_ostream.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/format_item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_ostream.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. atter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/ostream_text_ostream.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/origin_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_config.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/accession_item.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/alignment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gap_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/gap_item.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_project_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /U1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/gather_iter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/OrgMod.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqfeat/OrgMod_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. YPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format TMPL=align_format -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format TMPL=align_format -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/format_flags.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/showdefline.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showdefline.cpp:1236:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showalign.cpp:4138:28: warning: unused variable 'subject_seqid' [-Wunused-variable] const CSeq_id& subject_seqid = m_AV->GetSeqId(1); ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/tabular.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 1 warning generated. 2 warnings generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C readers -w -j3 --jobserver-auth=11,12 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/sra/readers/sra TMPL=sraread -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/sra/readers/bam TMPL=bamread -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -w -j3 --jobserver-auth=11,12 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -w -j3 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/sequence/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/align/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/structure/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/gnomon/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/gnomon/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/tree/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/phy_tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/seqqa/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/seqqa/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/cobalt/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/text/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/primer/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/volume_merge/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/primer/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/id_mapper/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT sequence/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT gnomon/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT seqqa/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT volume_merge/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT primer/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /opt/pkg/bin/gmake -C dustmask -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information fIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. or /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UserIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. p -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-fIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. ormat-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/win_mask_config.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 1 warning generated. 2 warnings generated. clude -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT dbindex_search/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT blast_sra_input/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /opt/pkg/bin/gmake -C composition_adjustment -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pk2 warnings generated. g/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core TMPL=blast -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core TMPL=blast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_query_info.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/aa_ungapped.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEB/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 1 warning generated. UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build/2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFF1 warning generated. SET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 1 warning generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/nc2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/dbindex/dbindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 2 warnings generated. bi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api TMPL=xblast -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api TMPL=xblast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_aa_ungapped.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_math.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. rc/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbu1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 3 warnings generated. lk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -W1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. no-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_blast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. _OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. bi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/nIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 3 warnings generated. cbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /Users/pbulk2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-striIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rps_aux.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/search_strategy.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ngs -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. EBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 1 warning generated. 1 warning generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. -blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c+In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 1 warning generated. 1 warning generated. +/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/cIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/deltablast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/pssm_input.hpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_aa_ungapped.c -o .core_aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_diagnostics.c -o .core_blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_engine.c -o .core_blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_extend.c -o .core_blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_filter.c -o .core_blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_gapalign.c -o .core_blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_hits.c -o .core_blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_hspstream.c -o .core_blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msseIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ In file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 1 warning generated. 2 warnings generated. 4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_itree.c -o .core_blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_kappa.c -o .core_blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_lookup.c -o .core_blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_aalookup.c -o .core_blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_aascan.c -o .core_blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_nalookup.c -o .core_blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_nascan.c -o .core_blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_message.c -o .core_blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_options.c -o .core_blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_psi.c -o .core_blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_na_ungapped.c -o .core_na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/wIn file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. In file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ ork/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_psi_priv.c -o .core_blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_seg.c -o .core_blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_seqsrc.c -o .core_blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_setup.c -o .core_blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_stat.c -o .core_blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_traceback.c -o .core_blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -mIn file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. 1 warning generated. 64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_blast_util.c -o .core_blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_gapinfo.c -o .core_gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_greedy_align.c -o .core_greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_hspfilter_collector.c -o .core_hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_hspfilter_culling.c -o .core_hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_link_hsps.c -o .core_link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_lookup_util.c -o .core_lookup_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_lookup_wrap.c -o .core_lookup_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_index_ungapped.c .core_ncbi_math.c .core_blast_seqsrc.c .core_blast_engine.c .core_blast_filter.c .core_lookup_wrap.c .core_spliced_hits.c .core_gencode_singleton.c .core_hspfilter_besthit.c .core_gapinfo.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_nascan.c .core_blast_lookup.c .core_blast_hspstream.c .core_blast_diagnostics.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_jumper.c .core_blast_psi_priv.c .core_blast_aalookup.c .core_blast_util.c .core_hspfilter_mapper.c .core_blast_posit.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_kappa.c .core_blast_hits.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_blast_message.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_blast_query_info.c .core_phi_lookup.c .core_blast_aascan.c .core_blast_gapalign.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84:9: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma ivdep ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91:9: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma ivdep ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98:9: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma ivdep ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447:9: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma ivdep ^ 3 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/showalign.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/showalign.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -std4 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/build_archive.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 4 warnings generated. lib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/format/sam_formatter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/sam.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. last_input.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clangIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARG1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ 2 warnings generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_igblast.log.new: No such file or directory. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -w -j3 --jobserver-auth=15,16 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C blast_format -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -w -j3 --jobserver-auth=13,14 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j3 --jobserver-auth=17,18 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j3 --jobserver-auth=17,18 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j3 --jobserver-auth=11,12 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/clog/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/grid_cgi/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/eutils_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hydra_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/discrepancy/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hgvs/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/xmlreaders/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/hgvs/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/netstorage/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/biosample_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/biosample_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/lapackwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/cgi_redirect/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT clog/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/pmcidconv_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/misc/cgi_redirect/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT eutils_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT xmlreaders/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT biosample_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT data_loaders_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT pmcidconv_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C test -w -j3 --jobserver-auth=11,12 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2asn/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2flat/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn2fasta/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/flat2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/flat2asn/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asnval/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/asn_cleanup/Makefile.in || 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT dblb/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT tls/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dblb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/tls/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast -w -j3 --jobserver-auth=15,16 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blast_app_util -w -j3 --jobserver-auth=13,14 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blast_app_util -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blastp -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blastn -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blastx -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=tblastn -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=tblastx -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=psiblast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/psiblast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=rpsblast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=rpstblastn -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blast_formatter -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=blast_report -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_report.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=deltablast -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/deltablast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/deltablast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast TMPL=seedtop -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/seedtop_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blast_format.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/tabular.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker TMPL=winmasker -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp:52: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp:222:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp:222:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 4 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:58: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/segmasker TMPL=segmasker -w -j3 --jobserver-auth=11,12 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/segmasker/segmasker.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds | ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 1 warning generated. 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeblastdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb TMPL=blastdb_path -w -j3 --jobserver-auth=13,14 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_path.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/bitset/bm.h:6131:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/objtools/align_format/align_format_util.hpp:42: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/util/math/matrix.hpp:964:25: warning: 'CNcbistrstream_Base' is deprecated: (const char*, Tinteger, ios::openmode) constructor is deprecated, use string argument instead [-Wdeprecated-declarations] CNcbiIstrstream iss(line.c_str(), line.size()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include/corelib/ncbistre.hpp:315:2: note: 'CNcbistrstream_Base' has been explicitly marked deprecated here CNcbistrstream_Base(const char *_Ptr, TInteger _Count, IOS_BASE::openmode _Mode = _DefMode) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.10 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.10 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=8E2B0F9A-86C0-420D-959E-DF509D2308E6 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'all' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'all' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'check' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'check' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'libs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'libs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'mark-as-disabled' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'mark-as-disabled' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'clean' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'clean' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'purge' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'purge' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'check_add' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'check_add' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'depend' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'depend' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'all_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'all_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'sources_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'sources_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'clean_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'clean_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'purge_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'purge_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'all.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'all.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'sources.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'sources.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'clean.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'clean.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'purge.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'purge.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'all.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'all.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'sources.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'sources.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'clean.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'clean.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'purge.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'purge.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:321: warning: overriding recipe for target 'sources.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:321: warning: ignoring old recipe for target 'sources.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:326: warning: overriding recipe for target 'all.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:326: warning: ignoring old recipe for target 'all.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: overriding recipe for target 'clean.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: ignoring old recipe for target 'clean.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: overriding recipe for target 'purge.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: ignoring old recipe for target 'purge.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: overriding recipe for target 'clean_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: ignoring old recipe for target 'clean_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: overriding recipe for target 'purge_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: ignoring old recipe for target 'purge_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:347: warning: overriding recipe for target 'libs_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:347: warning: ignoring old recipe for target 'libs_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:350: warning: overriding recipe for target 'mark-as-disabled_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:350: warning: ignoring old recipe for target 'mark-as-disabled_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:352: warning: overriding recipe for target 'mark-as-disabled_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:352: warning: ignoring old recipe for target 'mark-as-disabled_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:356: warning: overriding recipe for target 'check_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:356: warning: ignoring old recipe for target 'check_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:358: warning: overriding recipe for target 'check_add_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:358: warning: ignoring old recipe for target 'check_add_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:361: warning: overriding recipe for target 'depend_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:361: warning: ignoring old recipe for target 'depend_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:39: warning: overriding recipe for target 'all_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:39: warning: ignoring old recipe for target 'all_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:46: warning: overriding recipe for target 'check_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:46: warning: ignoring old recipe for target 'check_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'libs_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'libs_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'mark-as-disabled_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'mark-as-disabled_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'clean_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'clean_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'purge_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'purge_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'check_add_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'check_add_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'depend_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'depend_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:51: warning: overriding recipe for target 'mark-as-disabled_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:51: warning: ignoring old recipe for target 'mark-as-disabled_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'all_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'all_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'libs_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'libs_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'clean_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'clean_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'purge_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'purge_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_add_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_add_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'depend_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'depend_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'sources_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'sources_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'all_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'all_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'libs_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'libs_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'clean_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'clean_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'purge_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'purge_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_add_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_add_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'depend_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'depend_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:36: warning: overriding recipe for target 'Makefile' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:36: warning: ignoring old recipe for target 'Makefile' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:59: warning: overriding recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.meta' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:59: warning: ignoring old recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.meta' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:62: warning: overriding recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/config.status' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:62: warning: ignoring old recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/config.status' NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'all' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'all' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'check' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'check' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'libs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'libs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'mark-as-disabled' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'mark-as-disabled' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'clean' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'clean' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'purge' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'purge' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'check_add' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'check_add' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'depend' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'depend' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: overriding recipe for target 'sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:275: warning: ignoring old recipe for target 'sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'all_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'all_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'sources_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'sources_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'clean_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'clean_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: overriding recipe for target 'purge_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:286: warning: ignoring old recipe for target 'purge_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'all.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'all.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'sources.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'sources.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'clean.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'clean.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: overriding recipe for target 'purge.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:292: warning: ignoring old recipe for target 'purge.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'all.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'all.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'sources.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'sources.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'clean.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'clean.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: overriding recipe for target 'purge.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:297: warning: ignoring old recipe for target 'purge.usr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:321: warning: overriding recipe for target 'sources.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:321: warning: ignoring old recipe for target 'sources.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:326: warning: overriding recipe for target 'all.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:326: warning: ignoring old recipe for target 'all.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: overriding recipe for target 'clean.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: ignoring old recipe for target 'clean.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: overriding recipe for target 'purge.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:337: warning: ignoring old recipe for target 'purge.nonusr' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: overriding recipe for target 'clean_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: ignoring old recipe for target 'clean_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: overriding recipe for target 'purge_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:344: warning: ignoring old recipe for target 'purge_sources' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:347: warning: overriding recipe for target 'libs_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:347: warning: ignoring old recipe for target 'libs_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:350: warning: overriding recipe for target 'mark-as-disabled_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:350: warning: ignoring old recipe for target 'mark-as-disabled_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:352: warning: overriding recipe for target 'mark-as-disabled_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:352: warning: ignoring old recipe for target 'mark-as-disabled_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:356: warning: overriding recipe for target 'check_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:356: warning: ignoring old recipe for target 'check_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:358: warning: overriding recipe for target 'check_add_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:358: warning: ignoring old recipe for target 'check_add_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:361: warning: overriding recipe for target 'depend_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_l:361: warning: ignoring old recipe for target 'depend_l.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:39: warning: overriding recipe for target 'all_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:39: warning: ignoring old recipe for target 'all_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:46: warning: overriding recipe for target 'check_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:46: warning: ignoring old recipe for target 'check_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'libs_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'libs_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'mark-as-disabled_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'mark-as-disabled_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'clean_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'clean_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'purge_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'purge_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'check_add_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'check_add_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: overriding recipe for target 'depend_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:49: warning: ignoring old recipe for target 'depend_r.real' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:51: warning: overriding recipe for target 'mark-as-disabled_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.meta_r:51: warning: ignoring old recipe for target 'mark-as-disabled_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'all_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'all_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'libs_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'libs_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'clean_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'clean_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'purge_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'purge_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_add_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_add_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'depend_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'depend_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'sources_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'sources_l.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'all_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'all_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'libs_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'libs_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'clean_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'clean_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'purge_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'purge_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'check_add_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'check_add_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: overriding recipe for target 'depend_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.requirements:26: warning: ignoring old recipe for target 'depend_r.needs-reqs' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:36: warning: overriding recipe for target 'Makefile' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:36: warning: ignoring old recipe for target 'Makefile' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:59: warning: overriding recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.meta' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:59: warning: ignoring old recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/Makefile.meta' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:62: warning: overriding recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/config.status' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/src/build-system/Makefile.configurables.real:62: warning: ignoring old recipe for target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/status/config.status' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -w -j3 --jobserver-auth=9,10 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -w -j3 --jobserver-auth=7,8 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.13.0+-src/c++/ReleaseMT/build'