=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.1nb2 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' Build session ID: EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -st/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. dlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4930:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return ParseEscapes(s_Unquote(move(str), n_read)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4998:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); ^ std:: 2 warnings generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp -o expr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 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-Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT 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-DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] return x_IsTruncatedJsonNumber(testString) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: note: cast one or both operands to int to silence this warning 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. last-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp -o dictionary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os 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-I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp -o itransaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /Users/p/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:33: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXConcat(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXSelect(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w.push_back(move(p)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w[i]->Merge(move(w[j])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Merge(move(w[0])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_States.push_back(move(state)); ^ std:: 13 warnings generated. bulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j1 mark-as-disabled gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C bzip2 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c. 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-I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if ((one = (s_Shmid[0] != -1)) | (two = (s_Shmid[1] != -1))) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: note: cast one or both operands to int to silence this warning 1 warning generated. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/pytho/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2757:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic ignored "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2762:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic warning "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 3 warnings generated. n3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/buil/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:52: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] || SERV_EqualInfo(skip, &svc->info))) { ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:46: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] } else if (SERV_EqualInfo(skip, &svc->info)) ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:32: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] cand[n].cand.info = &svc->info; ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:38: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { ^~~~~~~~~ 4 warnings generated. d/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:41: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream(move(stream)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_StatusText = move(status_text); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream = move(stream); ^ std:: 9 warnings generated. bi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:129:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CServiceDiscovery::TServer server(move(address), 1.0); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:130:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return make_shared(1, move(server)); ^ std:: 6 warnings generated. t+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Masters.insert(move(address)); ^ std:: 6 warnings generated. last+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depreIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Writer = move(writer); ^ std:: 5 warnings generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Address(move(address)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ThrottleStats(move(throttle_params)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] rv = move(args.GetArgs()); ^ std:: 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Impl->m_EnforcedServer = move(address); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return m_ServerPool->GetServer(this, move(server_address)); ^ std:: 10 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto result = m_SubConfigs.emplace(section, move(sub_config)); ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. eMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. tter.cpp -o netschedule_api_submitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/builIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. d/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp -o util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. t-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:34: warning: taking address of packed member 'status' of class or structure 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] HINFO_Status(hinfo, &load.status); ^~~~~~~~~~~ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C helpers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-cld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ommon -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 1 warning generated. ython3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ 17 warnings generated. /serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp -o memberid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp -o item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp -o classinfob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp -o member.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp -o classinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp -o choice.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 all warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found n3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/bin/awk: can't open file make_dbapi.log.new source line number 4 /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o //Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. NTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated 14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j1"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j1" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory Warning: (810.1) No service name provided for CTrackMgrClient '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /usr/bin/awk: can't open file make_medline.log.new source line number 4 /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp:15: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] temp_vector.push_back(move(new_evid)); ^ std:: 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/workIn file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. /ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:1873:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2412:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: 2 warnings generated. 1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] replies = move(ProcessSomeRequests(packet)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const value_type &' (aka 'const ncbi::CRef &') to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : TBaseClient(move(c)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_svc(move(c.m_Http_svc)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_session(move(c.m_Http_session)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Rpc_client(move(c.m_Rpc_client)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient<>::CGridRPCBaseClient' requested here : TBaseClient(move(c)), ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: 14 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. SION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 96916 (make_asn) /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cl/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 1 warning generated. ang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Feat_qual_choice.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Feat_qual_choice.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: 7 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp:8: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Apply_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Field_type.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: 7 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' /opt/pkg/bin/gmake -C search_by_rsid -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' /opt/pkg/bin/gmake -C primary_track -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 all gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pk/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: note: remove std::move call here tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: note: remove std::move call here tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: note: remove std::move call here tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^~~~~ ~ 6 warnings generated. g/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 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handle_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.1/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ 1 warning generated. 4.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] TSeqPos index = 0; ^ 1 warning generated. _REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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-stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG 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split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory 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creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fn/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:1711:52: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 1 warning generated. o-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ 1 warning generated. DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strin/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 1 warning generated. gs -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUN/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ 1 warning generated. ETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT manip/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFIL/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:513:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] ids = move(data.ids); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:517:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:574:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_CurrentSeqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1493:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] vecLinkEvids.push_back(move(pNewLinkEvid)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1498:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] delta_ext.Set().push_back(move(gap_ds)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1522:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().emplace_back(move(pDesc)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:2051:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 7 warnings generated. E_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:859:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 1 warning generated. gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/inclu/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:133:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] titles = move(data.titles); ^ std:: 1 warning generated. de/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -st/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] size_t record_counter = 0; ^ 1 warning generated. d=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/U/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:322:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SaveMods(move(accepted_mods), handle_existing, m_Mods); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:347:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:350:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:360:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:366:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:698:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seq_inst.SetHist().SetReplaces().SetIds() = move(secondary_ids); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:306:17: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here CModData( mod.GetName(), kEmptyStr); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:527:30: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here fPostMessage(CModData( canonicalName, kEmptyStr), e.GetMsg(), eDiag_Error, eModSubcode_Undefined); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:540:22: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here fPostMessage(CModData("",""), msg, eDiag_Info, eModSubcode_Applied); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1684:31: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here ::new((void*)__p) _Up(_VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1562:21: note: in instantiation of function template specialization 'std::allocator>::construct' requested here __a.construct(__p, _VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1413:14: note: in instantiation of function template specialization 'std::allocator_traits>>::__construct' requested here {__construct(__has_construct(), ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/list:1682:26: note: in instantiation of function template specialization 'std::allocator_traits>>::construct' requested here __node_alloc_traits::construct(__na, _VSTD::addressof(__hold->__value_), _VSTD::forward<_Args>(__args)...); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:774:22: note: in instantiation of function template specialization 'std::list::emplace_back' requested here mods.emplace_back(name, value); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: 14 warnings generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncb/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:324:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetSubtype().push_back(move(pSubSource)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:348:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:373:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:424:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:446:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:482:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:515:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:594:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dbtags.push_back(move(pDbtag)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:661:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetOrgMods().push_back(move(pOrgMod)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:818:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pField->SetData().SetFields().push_back(move(pSubfield)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:941:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] .push_back(move(pPub)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ 12 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:133:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetName() = move(names); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:143:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetEc() = move(ec_numbers); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:153:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetActivity() = move(activity); ^ std:: 3 warnings generated. i-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/bin/awk: can't open file make_seqdb.log.new source line number 4 /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/bui/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ 1 warning generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ 1 warning generated. /build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-stringIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ 1 warning generated. s -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] int index = 0; ^ 1 warning generated. BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /opt/pkg/bin/gmake -C cassandra -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /opt/pkg/bin/gmake -C ipg -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bl/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ 2 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated ld: warning: ignoring duplicate libraries: '-lz' ast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.1ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated 4.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] size_t seg = 0; ^ 1 warning generated. t+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 5 warnings generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) 2 warnings generated. last-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all File elink.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all File epost.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all File espell.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C efetch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all File efetch.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:486:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); ^ std:: 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: unused variable 'cds_range' [-Wunused-variable] auto cds_range = copy_feat->GetLocation().GetTotalRange(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o auto/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. def_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c+/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); ^ std:: 2 warnings generated. +/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:114:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:112:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ 1 warning generated. Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp:385:17: warning: lambda capture 'context' is not used [-Wunused-lambda-capture] [this, &context](CObjectIStream& in, const CObjectTypeInfo& type) ~~~^~~~~~~ 1 warning generated. -2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /opt/pkg/bin/gmake -C pubmed_fetch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /opt/pkg/bin/gmake -C pubmed_citmatch -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /opt/pkg/bin/gmake -C test_remote_updater -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pXref->GetId().IsLocal() & ^~~~~~~~~~~~~~~~~~~~~~~~~~ && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: note: cast one or both operands to int to silence this warning 1 warning generated. work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 1 warning generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Use/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ 1 warning generated. rs/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/forma/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ 1 warning generated. t/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ 1 warning generated. DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp:1574:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecat/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 1 warning generated. ed-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_align_format.log.new: No such file or directory. /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C readers -j1 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C sra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -j1 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /opt/pkg/bin/gmake -C sra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -j1 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -j1 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /opt/pkg/bin/gmake -C dustmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m6In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 1 warning generated. 4 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /opt/pkg/bin/gmake -C composition_adjustment -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ 2 warnings generated. c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /Users/pbulk/build/biology/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. t+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/bui/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 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-I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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phi_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. last+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ 1 warning generated. -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_engine.c -o .core_blast_engine.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_extend.c -o .core_blast_extend.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_filter.c -o .core_blast_filter.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_hits.c -o .core_blast_hits.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_itree.c -o .core_blast_itree.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST In file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_message.c -o .core_blast_message.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_options.c -o .core_blast_options.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_psi.c -o .core_blast_psi.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-In file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. 2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_seg.c -o .core_blast_seg.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_setup.c -o .core_blast_setup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_In file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ 2 warnings generated. In file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_stat.c -o .core_blast_stat.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_util.c -o .core_blast_util.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_gapinfo.c -o .core_gapinfo.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_greedy_align.c -o .core_greedy_align.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_link_hsps.c -o .core_link_hsps.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_lookup_util.c -o .core_lookup_util.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_pattern.c -o .core_pattern.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_phi_extend.c -o .core_phi_extend.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_posit.c -o .core_blast_posit.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_program.c -o .core_blast_program.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_tune.c -o .core_blast_tune.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_sw.c -o .core_blast_sw.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_split_query.c -o .core_split_query.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAIn file included from .core_jumper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. In file included from .core_hspfilter_mapper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. D_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_boost_erf.c -o .core_boost_erf.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_jumper.c -o .core_jumper.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 .core_spliced_hits.c -o .core_spliced_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] int subject_pos = hh->hsp->subject.offset; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] int num_hsps = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bi/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ 2 warnings generated. n/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 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-c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 2 warnings generated. +/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/see/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; ^ 1 warning generated. dtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. e -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_seqsrc.c .core_ncbi_math.c .core_index_ungapped.c .core_blast_engine.c .core_blast_filter.c .core_lookup_wrap.c .core_gapinfo.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_psi_priv.c .core_blast_encoding.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_greedy_align.c .core_pattern.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_gapalign.c .core_blast_query_info.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_options.c .core_blast_tune.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] int hashCount=0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] int lsh_hits=0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-coIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. mmon -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/User/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /opt/pkg/bin/gmake -C blast_format -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j1 mark-as-disabled gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j1 mark-as-disabled gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j1 all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn2flat/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flat2asn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asnval/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cleanup/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id1_fetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT convert_seq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT objmgr/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gi2taxid/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netschedule/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid/Makefile config.status: creating 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT magicblast/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT multipattern/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT prt2fsm/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pub_report/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in` test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT feat_import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netcache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netcache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /bin/mkdir -p `/usr/bin/dirname 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/tls/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tls/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/pubseq_gateway/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j1 all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' blastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lgbseq-static', '-lmedlars-static', '-lmla-static', '-lpthread', '-lpubmed-static', '-lsubmit-static', '-lvalid-static', '-lvariation-static', '-lxalnmgr-static', '-lxcleanup-static', '-lxformat-static', '-lxlogging-static', '-lxobjread-static', '-lz' valid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' blastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-statld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ic -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,Apld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' plicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' rk,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' tprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' l,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' l,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,Apld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' plicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker -j1 all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j1 all /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blald: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' st+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j1 all ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthreald: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' d -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmeld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' r-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] unsigned int line_ctr = 0; ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lreld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' solv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServiceld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' s -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lvariation', '-lxalnmgr', '-lxcgi', '-lxconnect', '-lxconnext', '-lxhtml', '-lxlogging', '-lxncbi', '-lxobjread', '-lxser', '-lxutil', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ork,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] int vol_ctr(0); ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServiceld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' s -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j1 all In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] bool success = m_DB->EndBuild(); ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=EDA45B79-122F-4F75-BB3C-76A04CC0F2A7 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeclusterdb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ork,ApplicationServices -lpthread -o makeclusterdb strip makeclusterdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'