=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for kallisto-0.50.1
/opt/pkg/bin/cmake -S/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 -B/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 --check-build-system CMakeFiles/Makefile.cmake 0
/opt/pkg/bin/cmake -E cmake_progress_start /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/CMakeFiles /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1//CMakeFiles/progress.marks
/opt/pkg/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
/opt/pkg/bin/gmake  -f CMakeFiles/bifrost.dir/build.make CMakeFiles/bifrost.dir/depend
gmake[2]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 && /opt/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1 /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/CMakeFiles/bifrost.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
/opt/pkg/bin/gmake  -f CMakeFiles/bifrost.dir/build.make CMakeFiles/bifrost.dir/build
gmake[2]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
[  3%] Creating directories for 'bifrost'
/opt/pkg/bin/cmake -Dcfgdir= -P /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/tmp/bifrost-mkdirs.cmake
/opt/pkg/bin/cmake -E touch /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/bifrost-stamp/bifrost-mkdir
[  7%] No download step for 'bifrost'
/opt/pkg/bin/cmake -E echo_append
/opt/pkg/bin/cmake -E touch /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/bifrost-stamp/bifrost-download
[ 11%] No update step for 'bifrost'
/opt/pkg/bin/cmake -E echo_append
/opt/pkg/bin/cmake -E touch /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/bifrost-stamp/bifrost-update
[ 15%] No patch step for 'bifrost'
/opt/pkg/bin/cmake -E echo_append
/opt/pkg/bin/cmake -E touch /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/bifrost-stamp/bifrost-patch
[ 19%] Performing configure step for 'bifrost'
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost && mkdir -p build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX= "-DCMAKE_CXX_FLAGS=-Wno-subobject-linkage -Wno-return-type"
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The C compiler identification is AppleClang 15.0.0.15000040
-- The CXX compiler identification is AppleClang 15.0.0.15000040
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
Compilation architecture: 
Build type: Release
Maximum k-mer size: 31
Maximum g-mer size: 31
-- Found ZLIB: /opt/pkg/lib/libz.dylib (found version "1.2.13")  
-- Configuring done (3.3s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost && /opt/pkg/bin/cmake -E touch /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/bifrost-stamp/bifrost-configure
[ 23%] Performing build step for 'bifrost'
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost && cd build && gmake
gmake[3]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
/opt/pkg/bin/cmake -S/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost -B/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build --check-build-system CMakeFiles/Makefile.cmake 0
/opt/pkg/bin/cmake -E cmake_progress_start /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/CMakeFiles /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build//CMakeFiles/progress.marks
gmake  -f CMakeFiles/Makefile2 all
gmake[4]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake  -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/depend
gmake[5]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build && /opt/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src/CMakeFiles/bifrost_static.dir/DependInfo.cmake "--color="
gmake[5]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake  -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/build
gmake[5]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
[  3%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:10:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:345:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        color_names = move(o.color_names);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:347:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        overflow = move(o.overflow);
                   ^
                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:11:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:153:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:197:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:276:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        if (!new_cs.isEmpty()) *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                                   ^
                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:299:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                ^
                                std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:826:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (uc != nullptr) *(p.second.first) = move(*uc);
                                                                   ^
                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:318:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        v_files = move(files_tmp);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                                 ^
                                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<DataAccessor<>>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:106:32: note: in instantiation of member function 'Unitig<DataAccessor<>>::Unitig' requested here
            v_unitigs[i] = new Unitig<U>(std::move(o.v_unitigs[i]->getSeq()), std::move(o.v_unitigs[i]->getCov()));
                               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:726:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    *ds = move(new_ds);
          ^
          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:411:9: note: in instantiation of member function 'ColoredCDBG<>::initUnitigColors' requested here
        initUnitigColors(opt);
        ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:602:50: note: in instantiation of member function 'ColoredCDBG<>::buildColors' requested here
                    if (success) success = ccdbg.buildColors(opt);
                                                 ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:616:14: note: in instantiation of member function 'ColoredCDBG<>::loadColors' requested here
        if (!loadColors(input_graph_fn, input_colors_fn, nb_threads, verbose)) return false;
             ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:225:87: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            const bool ret = CompactedDBG<DataAccessor<U>, DataStorage<U>>::mergeData(move(o), nb_threads, verbose);
                                                                                      ^
                                                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:60: note: in instantiation of member function 'ColoredCDBG<>::merge' requested here
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                           ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:696:50: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
                    if (success) success = ccdbg.search(opt.filename_query_in, opt.prefixFilenameOut, opt.ratio_kmers, opt.inexact_search, opt.nb_threads, opt.verbose);
                                                 ^
68 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:10:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:345:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        color_names = move(o.color_names);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:347:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        overflow = move(o.overflow);
                   ^
                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:11:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:153:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:197:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:276:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        if (!new_cs.isEmpty()) *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                                   ^
                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:299:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                ^
                                std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:826:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (uc != nullptr) *(p.second.first) = move(*uc);
                                                                   ^
                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:318:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        v_files = move(files_tmp);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                                 ^
                                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<DataAccessor<>>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:106:32: note: in instantiation of member function 'Unitig<DataAccessor<>>::Unitig' requested here
            v_unitigs[i] = new Unitig<U>(std::move(o.v_unitigs[i]->getSeq()), std::move(o.v_unitigs[i]->getCov()));
                               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:726:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    *ds = move(new_ds);
          ^
          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:411:9: note: in instantiation of member function 'ColoredCDBG<>::initUnitigColors' requested here
        initUnitigColors(opt);
        ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:602:50: note: in instantiation of member function 'ColoredCDBG<>::buildColors' requested here
                    if (success) success = ccdbg.buildColors(opt);
                                                 ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:616:14: note: in instantiation of member function 'ColoredCDBG<>::loadColors' requested here
        if (!loadColors(input_graph_fn, input_colors_fn, nb_threads, verbose)) return false;
             ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:225:87: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            const bool ret = CompactedDBG<DataAccessor<U>, DataStorage<U>>::mergeData(move(o), nb_threads, verbose);
                                                                                      ^
                                                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:60: note: in instantiation of member function 'ColoredCDBG<>::merge' requested here
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                           ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:696:50: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
                    if (success) success = ccdbg.search(opt.filename_query_in, opt.prefixFilenameOut, opt.ratio_kmers, opt.inexact_search, opt.nb_threads, opt.verbose);
                                                 ^
68 warnings generated.
[  6%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:584:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:634:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:708:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:756:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
5 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:584:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:634:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:708:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:756:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
5 warnings generated.
[  9%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:47:139: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                                                    k_(o.k_), fast_div_(o.fast_div_), seed1(o.seed1), seed2(o.seed2), ush(move(o.ush)) {
                                                                                                                                          ^
                                                                                                                                          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:98:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ush = move(o.ush);
              ^
              std::
3 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:47:139: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                                                    k_(o.k_), fast_div_(o.fast_div_), seed1(o.seed1), seed2(o.seed2), ush(move(o.ush)) {
                                                                                                                                          ^
                                                                                                                                          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:98:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ush = move(o.ush);
              ^
              std::
3 warnings generated.
[ 12%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:721:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:771:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1097:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[0] = move(full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1098:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[1] = move(non_full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1121:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[0] = move(full_uc);
            ^
            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1122:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[1] = move(non_full_uc);
            ^
            std::
33 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:721:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:771:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1097:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[0] = move(full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1098:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[1] = move(non_full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1121:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[0] = move(full_uc);
            ^
            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1122:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[1] = move(non_full_uc);
            ^
            std::
33 warnings generated.
[ 15%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp:8:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
3 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp:8:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
3 warnings generated.
[ 18%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedSequence.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 21%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/FASTX_Parser.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 25%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:17:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
GFA_Parser::GFA_Parser(GFA_Parser&& o) :    graph_filenames(move(o.graph_filenames)),
                                                            ^
                                                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:34:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_in = move(o.graph_in);
                   ^
                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:35:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_out = move(o.graph_out);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:317:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:318:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:320:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:330:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:332:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:334:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:366:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexA_id = move(line_fields[0]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:367:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexB_id = move(line_fields[2]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:421:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexA_id = move(line_fields[1]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:431:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexB_id = move(line_fields[4]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:514:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:515:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:517:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:527:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:529:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:531:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:565:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexA_id = move(line_fields[0]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:566:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexB_id = move(line_fields[2]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:613:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.edge_id = move(line_fields[0]);
                                ^
                                std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:620:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexA_id = move(line_fields[1]);
                                        ^
                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:630:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexB_id = move(line_fields[4]);
                                        ^
                                        std::
27 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:17:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
GFA_Parser::GFA_Parser(GFA_Parser&& o) :    graph_filenames(move(o.graph_filenames)),
                                                            ^
                                                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:34:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_in = move(o.graph_in);
                   ^
                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:35:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_out = move(o.graph_out);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:317:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:318:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:320:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:330:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:332:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:334:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:366:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexA_id = move(line_fields[0]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:367:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexB_id = move(line_fields[2]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:421:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexA_id = move(line_fields[1]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:431:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexB_id = move(line_fields[4]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:514:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:515:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:517:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:527:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:529:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:531:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:565:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexA_id = move(line_fields[0]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:566:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexB_id = move(line_fields[2]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:613:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.edge_id = move(line_fields[0]);
                                ^
                                std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:620:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexA_id = move(line_fields[1]);
                                        ^
                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:630:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexB_id = move(line_fields[4]);
                                        ^
                                        std::
27 warnings generated.
[ 28%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Kmer.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 31%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerIterator.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 34%] Building CXX object src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
5 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
5 warnings generated.
[ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/TinyBitmap.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 40%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
27 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
27 warnings generated.
[ 43%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -std=c11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -O2 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/roaring.c
[ 46%] Linking CXX static library libbifrost.a
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /opt/pkg/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /opt/pkg/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1
/usr/bin/ar qc libbifrost.a CMakeFiles/bifrost_static.dir/Bifrost.cpp.o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_static.dir/Kmer.cpp.o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o CMakeFiles/bifrost_static.dir/roaring.c.o
/usr/bin/ranlib libbifrost.a
gmake[5]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
[ 46%] Built target bifrost_static
gmake  -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/depend
gmake[5]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build && /opt/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src/CMakeFiles/bifrost_dynamic.dir/DependInfo.cmake "--color="
gmake[5]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake  -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build
gmake[5]: Entering directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
[ 50%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:10:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:345:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        color_names = move(o.color_names);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:347:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        overflow = move(o.overflow);
                   ^
                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:11:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:153:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:197:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:276:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        if (!new_cs.isEmpty()) *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                                   ^
                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:299:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                ^
                                std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:826:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (uc != nullptr) *(p.second.first) = move(*uc);
                                                                   ^
                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:318:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        v_files = move(files_tmp);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                                 ^
                                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<DataAccessor<>>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:106:32: note: in instantiation of member function 'Unitig<DataAccessor<>>::Unitig' requested here
            v_unitigs[i] = new Unitig<U>(std::move(o.v_unitigs[i]->getSeq()), std::move(o.v_unitigs[i]->getCov()));
                               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:726:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    *ds = move(new_ds);
          ^
          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:411:9: note: in instantiation of member function 'ColoredCDBG<>::initUnitigColors' requested here
        initUnitigColors(opt);
        ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:602:50: note: in instantiation of member function 'ColoredCDBG<>::buildColors' requested here
                    if (success) success = ccdbg.buildColors(opt);
                                                 ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:616:14: note: in instantiation of member function 'ColoredCDBG<>::loadColors' requested here
        if (!loadColors(input_graph_fn, input_colors_fn, nb_threads, verbose)) return false;
             ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:225:87: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            const bool ret = CompactedDBG<DataAccessor<U>, DataStorage<U>>::mergeData(move(o), nb_threads, verbose);
                                                                                      ^
                                                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:60: note: in instantiation of member function 'ColoredCDBG<>::merge' requested here
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                           ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:696:50: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
                    if (success) success = ccdbg.search(opt.filename_query_in, opt.prefixFilenameOut, opt.ratio_kmers, opt.inexact_search, opt.nb_threads, opt.verbose);
                                                 ^
68 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:10:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:345:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        color_names = move(o.color_names);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataStorage.tcc:347:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        overflow = move(o.overflow);
                   ^
                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:10:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataManager.hpp:11:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:153:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:197:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        *uc_ptr = move(uc_);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:276:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        if (!new_cs.isEmpty()) *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                                   ^
                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/DataAccessor.tcc:299:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *(p.second.first) = move(new_cs); // Move extracted colors to new (inserted) UnitigColors
                                ^
                                std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:826:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (uc != nullptr) *(p.second.first) = move(*uc);
                                                                   ^
                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:318:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        v_files = move(files_tmp);
                  ^
                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                                 ^
                                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<DataAccessor<>>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:106:32: note: in instantiation of member function 'Unitig<DataAccessor<>>::Unitig' requested here
            v_unitigs[i] = new Unitig<U>(std::move(o.v_unitigs[i]->getSeq()), std::move(o.v_unitigs[i]->getCov()));
                               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:399:26: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::build' requested here
        invalid = !this->build(opt_);
                         ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:599:37: note: in instantiation of member function 'ColoredCDBG<>::buildGraph' requested here
                    success = ccdbg.buildGraph(opt);
                                    ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:726:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    *ds = move(new_ds);
          ^
          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:411:9: note: in instantiation of member function 'ColoredCDBG<>::initUnitigColors' requested here
        initUnitigColors(opt);
        ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:602:50: note: in instantiation of member function 'ColoredCDBG<>::buildColors' requested here
                    if (success) success = ccdbg.buildColors(opt);
                                                 ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:94:16: note: in instantiation of member function 'KmerCovIndex<>::toData' requested here
    km_unitigs.toData(std::move(o.km_unitigs), nb_threads);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:630:45: note: in instantiation of member function 'CompactedDBG<>::toDataGraph' requested here
                    if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads);
                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:696:76: note: in instantiation of member function 'CompactedDBG<>::filter' requested here
                pair<bool, pair<BlockedBloomFilter, Roaring>> filter_out = filter(opt, nb_unique_kmers, nb_non_unique_kmers);
                                                                           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:609:36: note: in instantiation of member function 'CompactedDBG<>::build' requested here
                    success = cdbg.build(opt);
                                   ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:167:16: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        return read(input_graph_fn, input_index_fn, nb_threads, verbose);
               ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:612:61: note: in instantiation of member function 'CompactedDBG<DataAccessor<>, DataStorage<>>::read' requested here
        if (!CompactedDBG<DataAccessor<U>, DataStorage<U>>::read(input_graph_fn, nb_threads, verbose)) return false; // Read graph
                                                            ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:505:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *uc = move(r_uc);
                      ^
                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:616:14: note: in instantiation of member function 'ColoredCDBG<>::loadColors' requested here
        if (!loadColors(input_graph_fn, input_colors_fn, nb_threads, verbose)) return false;
             ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:623:80: note: in instantiation of member function 'ColoredCDBG<>::read' requested here
                    if (lopt.filename_index_in.length() == 0) success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose);
                                                                               ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:225:87: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            const bool ret = CompactedDBG<DataAccessor<U>, DataStorage<U>>::mergeData(move(o), nb_threads, verbose);
                                                                                      ^
                                                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:644:60: note: in instantiation of member function 'ColoredCDBG<>::merge' requested here
                            if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose);
                                                           ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:325:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexFASTA' requested here
        p_readSuccess_checksum = readGraphFromIndexFASTA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:378:34: note: in instantiation of member function 'CompactedDBG<>::readGraphFromIndexGFA' requested here
        p_readSuccess_checksum = readGraphFromIndexGFA(input_graph_fn, input_index_fn, k_, g_);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1631:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
    return readBinaryGraph(in);
           ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:383:34: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
        p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
                                 ^
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:656:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
                    else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
                                         ^
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.hpp:369:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColoredCDBG.tcc:1758:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                buffers_seq.push_back(move(s));
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Bifrost.cpp:696:50: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
                    if (success) success = ccdbg.search(opt.filename_query_in, opt.prefixFilenameOut, opt.ratio_kmers, opt.inexact_search, opt.nb_threads, opt.verbose);
                                                 ^
68 warnings generated.
[ 53%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:584:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:634:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:708:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:756:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
5 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:584:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:634:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:708:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BitContainer.cpp:756:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
5 warnings generated.
[ 56%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:47:139: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                                                    k_(o.k_), fast_div_(o.fast_div_), seed1(o.seed1), seed2(o.seed2), ush(move(o.ush)) {
                                                                                                                                          ^
                                                                                                                                          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:98:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ush = move(o.ush);
              ^
              std::
3 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:47:139: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                                                    k_(o.k_), fast_div_(o.fast_div_), seed1(o.seed1), seed2(o.seed2), ush(move(o.ush)) {
                                                                                                                                          ^
                                                                                                                                          std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BlockedBloomFilter.cpp:98:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ush = move(o.ush);
              ^
              std::
3 warnings generated.
[ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:721:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:771:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1097:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[0] = move(full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1098:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[1] = move(non_full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1121:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[0] = move(full_uc);
            ^
            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1122:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[1] = move(non_full_uc);
            ^
            std::
33 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:2:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.hpp:6:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:721:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                *this = move(new_uc);
                        ^
                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:771:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            *this = move(new_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1097:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[0] = move(full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1098:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            uc[1] = move(non_full_uc);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1121:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[0] = move(full_uc);
            ^
            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/ColorSet.cpp:1122:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    uc[1] = move(non_full_uc);
            ^
            std::
33 warnings generated.
[ 62%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp:8:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
3 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.cpp:8:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
3 warnings generated.
[ 65%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedSequence.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 68%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/FASTX_Parser.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 71%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:17:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
GFA_Parser::GFA_Parser(GFA_Parser&& o) :    graph_filenames(move(o.graph_filenames)),
                                                            ^
                                                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:34:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_in = move(o.graph_in);
                   ^
                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:35:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_out = move(o.graph_out);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:317:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:318:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:320:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:330:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:332:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:334:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:366:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexA_id = move(line_fields[0]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:367:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexB_id = move(line_fields[2]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:421:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexA_id = move(line_fields[1]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:431:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexB_id = move(line_fields[4]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:514:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:515:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:517:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:527:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:529:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:531:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:565:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexA_id = move(line_fields[0]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:566:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexB_id = move(line_fields[2]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:613:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.edge_id = move(line_fields[0]);
                                ^
                                std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:620:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexA_id = move(line_fields[1]);
                                        ^
                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:630:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexB_id = move(line_fields[4]);
                                        ^
                                        std::
27 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:17:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
GFA_Parser::GFA_Parser(GFA_Parser&& o) :    graph_filenames(move(o.graph_filenames)),
                                                            ^
                                                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                      ^
                                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:18:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                                            graph_out(move(o.graph_out)), graph_in(move(o.graph_in)),
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:34:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_in = move(o.graph_in);
                   ^
                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:35:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        graph_out = move(o.graph_out);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:317:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:318:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:320:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:330:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:332:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:334:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:366:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexA_id = move(line_fields[0]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:367:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                e.vertexB_id = move(line_fields[2]);
                               ^
                               std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:421:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexA_id = move(line_fields[1]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:431:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                else e.vertexB_id = move(line_fields[4]);
                                    ^
                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:514:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:515:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[1]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:517:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 2; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:527:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.id = move(line_fields[0]);
                           ^
                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:529:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    s.seq = move(line_fields[2]);
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:531:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    for (size_t i = 3; i < line_fields_sz; ++i) s.tags.push_back(move(line_fields[i]));
                                                                                 ^
                                                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:565:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexA_id = move(line_fields[0]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:566:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.vertexB_id = move(line_fields[2]);
                                   ^
                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:613:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    e.edge_id = move(line_fields[0]);
                                ^
                                std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:620:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexA_id = move(line_fields[1]);
                                        ^
                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/GFA_Parser.cpp:630:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    else e.vertexB_id = move(line_fields[4]);
                                        ^
                                        std::
27 warnings generated.
[ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Kmer.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerIterator.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 81%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
5 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
5 warnings generated.
[ 84%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/TinyBitmap.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
1 warning generated.
[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
27 warnings generated.
warning: unknown warning option '-Wno-subobject-linkage' [-Wunknown-warning-option]
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:32:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.hpp:157:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
                                  ^
                                  std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:18:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                v = move(v_tmp);
                    ^
                    std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:35:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1149:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)) {
                                                                                     ^
                                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1151:85: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
            for (size_t i = 0; i < NB_STREAMCOUNTER_PER_READHASHER; ++i) sc_km[i] = move(o.sc_km[i]);
                                                                                    ^
                                                                                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/KmerStream.hpp:1673:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                rsh = move(rqh);
                      ^
                      std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:38:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/MinimizerIndex.hpp:12:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:536:48: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
            printf("bit array of size %lu: \n",_size);
                                      ~~~      ^~~~~
                                      %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:540:38: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                    printf(" (%lu) ",ii);
                              ~~~    ^~
                              %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:40: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                        ~~~            ^~
                        %llu
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/BooPHF.h:549:43: warning: format specifies type 'unsigned long' but the argument has type 'value_type' (aka 'unsigned long long') [-Wformat]
                printf("%lu :  %lu,  ",ii,_ranks[ii]);
                               ~~~        ^~~~~~~~~~
                               %llu
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:7:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
                                                        ^
                                                        std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:41:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                     ^
                                                                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
                                                                                   ^
                                                                                   std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:829:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                            ^
                            std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:147:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
        h_kmers_ccov.insert(move(km), move(it_s->ccov));
                                      ^
                                      std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:700:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                bf = move(filter_out.second.first);
                     ^
                     std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:701:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                r = move(filter_out.second.second);
                    ^
                    std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.tcc:2771:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
    if (reference_mode) bf2 = move(bf1);
                              ^
                              std::
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.cpp:1:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.hpp:324:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/UnitigMap.tcc:4:
In file included from /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/CompactedDBG.hpp:831:
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:1690:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                       ^
                                       std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2423:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                unitig = new Unitig<U>(move(cs), move(cc));
                                                 ^
                                                 std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                           ^
                                           std::
/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/IO.tcc:2534:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
                    unitig = new Unitig<U>(move(cs), move(cc));
                                                     ^
                                                     std::
27 warnings generated.
[ 90%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -std=c11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -fPIC -O2 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/src/roaring.c
[ 93%] Linking CXX shared library libbifrost.dylib
cd /Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build/src && /opt/pkg/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1
/Users/pbulk/build/biology/kallisto/work/.cwrapper/bin/clang++ -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=11.3 -dynamiclib -Wl,-headerpad_max_install_names -L/opt/pkg/lib -o libbifrost.dylib -install_name @rpath/libbifrost.dylib CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o  -lpthread /opt/pkg/lib/libz.dylib 
ld: warning: ignoring file '/opt/pkg/lib/libz.1.dylib': found architecture 'arm64', required architecture 'x86_64'
ld: Undefined symbols:
  _deflate, referenced from:
      zstr::ostreambuf::deflate_loop(int) in Bifrost.cpp.o
  _deflateEnd, referenced from:
      std::__1::unique_ptr<zstr::detail::z_stream_wrapper, std::__1::default_delete<zstr::detail::z_stream_wrapper>>::~unique_ptr() in Bifrost.cpp.o
      zstr::ostreambuf::~ostreambuf() in Bifrost.cpp.o
      std::__1::unique_ptr<zstr::detail::z_stream_wrapper, std::__1::default_delete<zstr::detail::z_stream_wrapper>>::~unique_ptr() in GFA_Parser.cpp.o
      zstr::istreambuf::~istreambuf() in GFA_Parser.cpp.o
      zstr::istreambuf::~istreambuf() in GFA_Parser.cpp.o
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
      ...
  _deflateInit2_, referenced from:
      zstr::ostreambuf::ostreambuf(std::__1::basic_streambuf<char, std::__1::char_traits<char>>*, unsigned long, int, int) in Bifrost.cpp.o
  _deflateReset, referenced from:
      zstr::ostreambuf::sync() in Bifrost.cpp.o
      zstr::ostreambuf::~ostreambuf() in Bifrost.cpp.o
  _gzclose, referenced from:
      FileParser::getFileFormat(char const*) in Bifrost.cpp.o
      FastqFile::operator=(FastqFile&&) in FASTX_Parser.cpp.o
      FastqFile::close() in FASTX_Parser.cpp.o
      FastqFile::~FastqFile() in FASTX_Parser.cpp.o
      FastqFile::reopen() in FASTX_Parser.cpp.o
      FastqFile::open_next() in FASTX_Parser.cpp.o
  _gzopen, referenced from:
      FileParser::getFileFormat(char const*) in Bifrost.cpp.o
      FastqFile::FastqFile(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>>, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>>>>) in FASTX_Parser.cpp.o
      FastqFile::reopen() in FASTX_Parser.cpp.o
      FastqFile::open_next() in FASTX_Parser.cpp.o
  _gzread, referenced from:
      FileParser::getFileFormat(char const*) in Bifrost.cpp.o
      kseq_read(kseq_t*) in FASTX_Parser.cpp.o
      kseq_read(kseq_t*) in FASTX_Parser.cpp.o
      kseq_read(kseq_t*) in FASTX_Parser.cpp.o
      ks_getuntil2(__kstream_t*, int, __kstring_t*, int*, int) in FASTX_Parser.cpp.o
  _inflate, referenced from:
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
  _inflateEnd, referenced from:
      std::__1::unique_ptr<zstr::detail::z_stream_wrapper, std::__1::default_delete<zstr::detail::z_stream_wrapper>>::~unique_ptr() in Bifrost.cpp.o
      zstr::ostreambuf::~ostreambuf() in Bifrost.cpp.o
      std::__1::unique_ptr<zstr::detail::z_stream_wrapper, std::__1::default_delete<zstr::detail::z_stream_wrapper>>::~unique_ptr() in GFA_Parser.cpp.o
      zstr::istreambuf::~istreambuf() in GFA_Parser.cpp.o
      zstr::istreambuf::~istreambuf() in GFA_Parser.cpp.o
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
      ...
  _inflateInit2_, referenced from:
      zstr::istreambuf::underflow() in GFA_Parser.cpp.o
clang: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[5]: *** [src/CMakeFiles/bifrost_dynamic.dir/build.make:309: src/libbifrost.dylib] Error 1
gmake[5]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake[4]: *** [CMakeFiles/Makefile2:131: src/CMakeFiles/bifrost_dynamic.dir/all] Error 2
gmake[4]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake[3]: *** [Makefile:139: all] Error 2
gmake[3]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1/ext/bifrost/build'
gmake[2]: *** [CMakeFiles/bifrost.dir/build.make:89: ext/bifrost/src/bifrost-stamp/bifrost-build] Error 2
gmake[2]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
gmake[1]: *** [CMakeFiles/Makefile2:105: CMakeFiles/bifrost.dir/all] Error 2
gmake[1]: Leaving directory '/Users/pbulk/build/biology/kallisto/work/kallisto-0.50.1'
gmake: *** [Makefile:139: all] Error 2
*** Error code 2

Stop.
bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/kallisto
*** Error code 1

Stop.
bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/kallisto