=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.1 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7641 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7641 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' gmake[1]: warning: -j3 forced in submake: resetting jobserver mode. Build session ID: 29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency Updating information dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -st/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. dlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4930:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return ParseEscapes(s_Unquote(move(str), n_read)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:4998:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); ^ std:: 2 warnings generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8113 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for Updating dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp. Updating dependency Updating information dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp -o utf8.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp -o checksum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp -o itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] return x_IsTruncatedJsonNumber(testString) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:2844:12: note: cast one or both operands to int to silence this warning 1 warning generated. last-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp -o ascii85.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp -o md5.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp -o dictionary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. 17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp -o static_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c -o miscmath.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp -o mutex_pool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp -o util_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /Users/p/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:33: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXConcat(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXSelect(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w.push_back(move(p)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w[i]->Merge(move(w[j])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Merge(move(w[0])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_States.push_back(move(state)); ^ std:: 1 warning generated. 13 warnings generated. bulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41223 mark-as-disabled gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41271 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45489 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45526 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45489 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45607 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45489 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45661 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45661 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo45661 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50450 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50450 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50450 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50450 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51065 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51065 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51065 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c1 warning generated. lang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52819 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52819 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53271 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53271 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20952 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53819 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53819 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53819 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c -o mbedtls/aria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] if ((one = (s_Shmid[0] != -1)) | (two = (s_Shmid[1] != -1))) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: note: cast one or both operands to int to silence this warning information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/pytho1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2757:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic ignored "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2762:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic warning "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 n3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/incl3 warnings generated. ude -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/buil/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:52: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] || SERV_EqualInfo(skip, &svc->info))) { ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:46: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] } else if (SERV_EqualInfo(skip, &svc->info)) ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:32: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] cand[n].cand.info = &svc->info; ^~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:38: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { ^~~~~~~~~ d/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 4 warnings generated. -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe 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-DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:41: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream(move(stream)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_StatusText = move(status_text); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream = move(stream); ^ std:: bi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:129:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CServiceDiscovery::TServer server(move(address), 1.0); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp:130:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return make_shared(1, move(server)); ^ std:: 9 warnings generated. 4 warnings generated. 6 warnings generated. t+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54866 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp::3434: : In file included from In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] :180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Masters.insert(move(address)); ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 6 warnings generated. 5 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depre/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. 5 warnings generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Writer = move(writer); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Address(move(address)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ThrottleStats(move(throttle_params)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] rv = move(args.GetArgs()); ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Impl->m_EnforcedServer = move(address); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return m_ServerPool->GetServer(this, move(server_address)); ^ std:: 4 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto result = m_SubConfigs.emplace(section, move(sub_config)); ^ std:: 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 10 warnings generated. eMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submiIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. tter.cpp -o netschedule_api_submitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/builIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. 5 warnings generated. d/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp -o util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. 4 warnings generated. t-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 5 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82937 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82920 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54866 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13505 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:34: warning: taking address of packed member 'status' of class or structure 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] HINFO_Status(hinfo, &load.status); ^~~~~~~~~~~ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13480 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54866 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17543 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17507 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27264 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27264 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27264 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information Updating for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27264 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27264 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C helpers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31212 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31212 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31273 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31273 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-cld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ommon -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31273 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40719 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 1 warning generated. ython3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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-I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp -o objstack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp -o serializable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40847 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40809 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65575 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65575 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pythold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found n3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40809 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40809 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40809 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92432 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92432 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92432 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93775 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94063 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94063 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo94063 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93775 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o //Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REE1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. NTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated 14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19890 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4636 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95988 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20179 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. + \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. tree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/Releasegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. MT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd megmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. dline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Usgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/sgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. eqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremagmake[5]: warning: -j3 forced in submake: resetting jobserver mode. t' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/gegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. neral.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ buigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. lddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. -blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/bgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/srgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. c/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/bugmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ild/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "obWarning: (810.1) No service name provided for CTrackMgrClient gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. jects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/buildgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29478 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34288 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34288 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34288 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34288 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35259 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35259 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35259 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35259 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36579 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36579 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36579 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36579 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39165 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39165 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39165 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39165 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41740 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41861 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/workIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp:15: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] temp_vector.push_back(move(new_evid)); ^ std:: In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. 1 warning generated. /ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:1873:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2412:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: 1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu+2 warnings generated. +17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41111 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64998 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64998 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64998 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64998 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64998 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67497 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67497 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67497 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67497 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68487 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68487 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68487 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68487 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69538 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69538 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69538 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69538 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency Updating information for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70611 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70600 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] replies = move(ProcessSomeRequests(packet)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72615 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75106 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77804 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77804 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77804 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77804 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78969 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78969 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78969 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78969 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80605 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82428 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82428 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82428 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82428 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84022 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84022 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84022 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84022 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating Updating dependency Updating information for dependency information for dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85363 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87657 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87657 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87657 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87657 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89343 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89343 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89343 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89343 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency Updating information dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90325 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90325 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90325 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90325 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93176 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93252"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93252 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93252 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /ogmake[6]: warning: -j3 forced in submake: resetting jobserver mode. pt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93252 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93115 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93115 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93115 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97950 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97950 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97950 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo97950 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo413 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo413 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo413 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo413 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3521 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3521 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3521 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3521 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3521 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5555 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5555 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5555 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5555 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7796 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7796 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7796 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7796 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9567 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9567 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9567 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9567 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11157 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11157 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11157 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11157 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13795 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13795 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13795 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13795 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for Updating dependency information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16050 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16050 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16050 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16050 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17828 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17828 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17828 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17828 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19217 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19217 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19217 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19217 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const value_type &' (aka 'const ncbi::CRef &') to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19217 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23685 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23685 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23685 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23685 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27234 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31467 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31467 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31467 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31467 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33935 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43517 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43517 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43517 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43517 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46372 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : TBaseClient(move(c)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_svc(move(c.m_Http_svc)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_session(move(c.m_Http_session)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Rpc_client(move(c.m_Rpc_client)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient<>::CGridRPCBaseClient' requested here : TBaseClient(move(c)), ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 14 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 4 warnings generated. SION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 4 warnings generated. 4 warnings generated. Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53064 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53064 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53064 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo53064 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54705 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54705 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54705 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54705 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55940 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55940 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55940 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55940 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56698 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56698 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56698 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56698 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57592 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57592 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57592 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57592 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 58446 (make_asn) gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58360 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cl1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 1 warning generated. ang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58354 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62502 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62502 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63235 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63235 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63235 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63235 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64595 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64595 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64595 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64595 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66263 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66263 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66263 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66263 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency Updating information for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67730 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67730 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67730 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo67730 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69453 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69453 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69453 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69453 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Feat_qual_choice.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Feat_qual_choice.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp:8: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/Apply_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/Field_type.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: 7 warnings generated. 7 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69453 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72419 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72419 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72419 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72419 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73548 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73548 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73548 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73548 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74853 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74853 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74853 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74853 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76249 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76260 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76271 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76271 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76271 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76271 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76260 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77502 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77502 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77502 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77502 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20164 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C primary_track -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78442 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78453 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78453 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78453 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78453 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78453 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for Updating dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pk/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: note: remove std::move call here tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: note: remove std::move call here tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^~~~~ ~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: note: remove std::move call here tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^~~~~ ~ g/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/p6 warnings generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.1/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ 1 warning generated. 4.1+-src/c++/ReleaseMT/inc 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object_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] TSeqPos index = 0; ^ 1 warning generated. _REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG 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seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6591 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6591 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6591 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fn/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:1711:52: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ o-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -1 warning generated. 1 warning generated. DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strin/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ gs -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUN1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ 1 warning generated. 1 warning generated. ETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6591 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80105 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18135 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18135 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18135 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp:334:12: warning: variable 'row' set but not used [-Wunused-but-set-variable] size_t row = 0; ^ /c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.1 warning generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25787 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25787 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25787 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c 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-I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:513:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] ids = move(data.ids); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:517:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:574:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_CurrentSeqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1493:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] vecLinkEvids.push_back(move(pNewLinkEvid)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1498:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] delta_ext.Set().push_back(move(gap_ds)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:1522:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().emplace_back(move(pDesc)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp:2051:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 7 warnings generated. /include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:859:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 1 warning generated. gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.1/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:133:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] titles = move(data.titles); ^ std:: 1 warning generated. 4.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -st/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] size_t record_counter = 0; ^ 1 warning generated. d=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncb/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:322:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SaveMods(move(accepted_mods), handle_existing, m_Mods); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:347:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:350:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:360:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:366:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:698:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seq_inst.SetHist().SetReplaces().SetIds() = move(secondary_ids); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:306:17: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here CModData( mod.GetName(), kEmptyStr); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:527:30: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here fPostMessage(CModData( canonicalName, kEmptyStr), e.GetMsg(), eDiag_Error, eModSubcode_Undefined); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:540:22: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here fPostMessage(CModData("",""), msg, eDiag_Info, eModSubcode_Applied); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1684:31: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here ::new((void*)__p) _Up(_VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1562:21: note: in instantiation of function template specialization 'std::allocator>::construct' requested here __a.construct(__p, _VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1413:14: note: in instantiation of function template specialization 'std::allocator_traits>>::__construct' requested here {__construct(__has_construct(), ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/list:1682:26: note: in instantiation of function template specialization 'std::allocator_traits>>::construct' requested here __node_alloc_traits::construct(__na, _VSTD::addressof(__hold->__value_), _VSTD::forward<_Args>(__args)...); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:774:22: note: in instantiation of function template specialization 'std::list::emplace_back' requested here mods.emplace_back(name, value); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:324:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetSubtype().push_back(move(pSubSource)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:348:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:373:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:424:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:446:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:482:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:515:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:594:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dbtags.push_back(move(pDbtag)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:661:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetOrgMods().push_back(move(pOrgMod)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:818:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pField->SetData().SetFields().push_back(move(pSubfield)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:941:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] .push_back(move(pPub)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:133:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetName() = move(names); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:143:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetEc() = move(ec_numbers); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp:153:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetActivity() = move(activity); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ 14 warnings generated. 3 warnings generated. 12 warnings generated. i-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26983 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26864 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26864 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26864 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59526 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59526 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59526 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/bui/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ 1 warning generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ 1 warning generated. 1 warning generated. /build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-stringIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ s -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -1 warning generated. D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59526 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68409 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo68409 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59526 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70121 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70121 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71862 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71862 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71862 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] int index = 0; ^ B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools1 warning generated. /blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71862 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79718 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79718 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79718 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79718 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80992 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80992 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo79718 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81977 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81977 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81977 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81977 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59401 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83421 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83421 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83421 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83421 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /opt/pkg/bin/gmake -C cassandra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87288 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87288 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88111 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88111 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88111 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88111 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87288 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87288 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /opt/pkg/bin/gmake -C ipg -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87288 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bl/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ 2 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated ld: warning: ignoring duplicate libraries: '-lz' ast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89881 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for Updating dependency information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo99175 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo99175 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo99175 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1397 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1397 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1397 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp ar cr libncbi_xreader_id2.a reader_id2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2242 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2242 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2242 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp ar cr libncbi_xreader_id1.a reader_id1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2787 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2787 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2787 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: -undefined suppress is deprecated ld: warning: -undefined suppress is deprecated gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89865 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3329 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3323 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89208 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4292 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4292 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4292 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4845 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4845 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4845 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] size_t seg = 0; ^ 1 warning generated. t+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 5 warnings generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) last-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -W2 warnings generated. all -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4845 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4845 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13753 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13753 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13753 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13753 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File elink.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14731 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14731 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14731 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14731 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File epost.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16269 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16269 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16269 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo16269 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency Updating information for dependency information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18555 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18555 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18555 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo18555 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19838 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19838 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19838 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19838 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21126 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21126 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21126 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21126 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22235 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22235 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22235 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22235 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24010 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24010 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24010 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24010 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25612 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25612 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25612 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25612 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File efetch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27201 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27201 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27201 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27201 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:486:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); ^ std:: 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27201 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13509 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo38293 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo38293 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo38293 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: unused variable 'cds_range' [-Wunused-variable] auto cds_range = copy_feat->GetLocation().GetTotalRange(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o auto1 warning generated. 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ def_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE 2 warnings generated. -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c+/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); ^ std:: 2 warnings generated. +/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:114:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/remote_updater.hpp:112:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 1 warning generated. -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp:385:17: warning: lambda capture 'context' is not used [-Wunused-lambda-capture] [this, &context](CObjectIStream& in, const CObjectTypeInfo& type) ~~~^~~~~~~ 1 warning generated. -2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /opt/pkg/bin/gmake -C pubmed_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /opt/pkg/bin/gmake -C pubmed_citmatch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /opt/pkg/bin/gmake -C test_remote_updater -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43693 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62261 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62261 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62261 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for Updating dependency information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 1 warning generated. _OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+//Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pXref->GetId().IsLocal() & ^~~~~~~~~~~~~~~~~~~~~~~~~~ && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: note: cast one or both operands to int to silence this warning 1 warning generated. work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62261 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73387 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73387 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73387 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 1 warning generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Use/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ rs/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/forma1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ 1 warning generated. t/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc1 warning generated. -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13411 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13411 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13411 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo13411 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17306 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17306 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17306 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp:1574:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecat1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 1 warning generated. ed-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17306 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo23869 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24673 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24677 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24684 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24684 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24677 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24780 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24673 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24818 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24835 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24866 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24894 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24815 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24910 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /opt/pkg/bin/gmake -C dustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27296 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27296 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27296 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30467 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30467 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30467 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 1 warning generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3./Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSI1 warning generated. ON_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /opt/pkg/bin/gmake -C composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56465 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56465 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56465 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFI2 warnings generated. LE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57576 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57576 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57576 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_encoding.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /Users/pbulk/build/biology/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ t+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.112 warnings generated. -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/bui/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ ld/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-2 warnings generated. blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. 1 warning generated. last+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70620 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70620 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70620 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 1 warning generated. -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70620 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78106 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78106 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80328 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80328 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80328 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for .core_aa_ungapped.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_lookup_util.c. Updating Updating dependency dependency information information for for .core_lookup_wrap.c. .core_matrix_freq_ratios.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_phi_lookup.c. Updating Updating dependency dependency information information for for .core_blast_parameters.c. .core_blast_posit.c. Updating dependency information for .core_blast_program.c. Updating Updating dependency dependency information information for for .core_blast_tune.c. .core_blast_query_info.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for Updating .core_blast_dynarray.c. dependency information for .core_split_query.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_spliced_hits.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.c/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] int subject_pos = hh->hsp->subject.offset; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] int num_hsps = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 2 warnings generated. wrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bla/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ st-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B2 warnings generated. 61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depreca/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ ted-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 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-Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wn/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 2 warnings generated. o-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_T/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; ^ 1 warning generated. HREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ 4 warnings generated. 2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_aa_ungapped.c -o .core_aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_diagnostics.c -o .core_blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_engine.c -o .core_blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecate1 warning generated. d-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_extend.c -o .core_blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_filter.c -o .core_blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_gapalign.c -o .core_blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_hits.c -o .core_blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_hspstream.c -o .core_blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_itree.c -o .core_blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-formaIn file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. t-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_kappa.c -o .core_blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_lookup.c -o .core_blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_aalookup.c -o .core_blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_aascan.c -o .core_blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_nalookup.c -o .core_blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_nascan.c -o .core_blast_nascan.o /Users/In file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_message.c -o .core_blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_options.c -o .core_blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_psi.c -o .core_blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_na_ungapped.c -o .core_na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_psi_priv.c -o .core_blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SES2 warnings generated. In file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ In file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. SION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_seg.c -o .core_blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_seqsrc.c -o .core_blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_setup.c -o .core_blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_stat.c -o .core_blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_traceback.c -o .core_blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_util.c -o .core_blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/p2 warnings generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_gapinfo.c -o .core_gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_greedy_align.c -o .core_greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_hspfilter_collector.c -o .core_hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_hspfilter_culling.c -o .core_hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_link_hsps.c -o .core_link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_lookup_util.c -o .core_lookup_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_lookup_wrap.c -o .core_lookup_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_ncbi_std.c -o .core_ncbi_std.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_ncbi_math.c -o .core_ncbi_math.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_encoding.c -o .core_blast_encoding.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_pattern.c -o .core_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_phi_gapalign.c -o .core_phi_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_phi_lookup.c -o .core_phi_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_query_info.c -o .core_blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE 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-DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_sw.c -o .core_blast_sw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_dynarray.c -o .core_blast_dynarray.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_gencode_singleton.c -o .core_gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_index_ungapped.c -o .core_index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_boost_erf.c -o .core_boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_jumper.c -o In file included from .core_hspfilter_mapper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ In file included from .core_jumper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. 1 warning generated. .core_jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_seqsrc.c .core_ncbi_math.c .core_index_ungapped.c .core_blast_engine.c .core_blast_filter.c .core_lookup_wrap.c .core_gapinfo.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_psi_priv.c .core_blast_encoding.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_greedy_align.c .core_pattern.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_gapalign.c .core_blast_query_info.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_options.c .core_blast_tune.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47325 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47325 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47325 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] int hashCount=0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] int lsh_hits=0; ^ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biolog2 warnings generated. y/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47325 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54958 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54958 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54958 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 6 warnings generated. -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-coIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. mmon -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64257 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64257 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64257 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/User/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 1 warning generated. s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64257 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64257 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85250 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85250 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85250 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88468 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55991 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C blast_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88501 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88501 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88501 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88501 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88581 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88581 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88746 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88746 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88746 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24934 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT clog/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT eutils_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlreaders/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT data_loaders_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93193 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90585 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/formatguess/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/multireader/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/hfilter/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/hfilter/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/splign/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/splign/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/discrepancy_report/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/biosample_chk/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bsdiff/Makefile.in` test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT idfetch/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4140 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4140 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4140 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4140 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' blastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lgbseq-static', '-lmedlars-static', '-lmla-static', '-lpthread', '-lpubmed-static', '-lsubmit-static', '-lvalid-static', '-lvariation-static', '-lxalnmgr-static', '-lxcleanup-static', '-lxformat-static', '-lxlogging-static', '-lxobjread-static', '-lz' valid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' blastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-statld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ic -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,Apld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' plicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewold: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' rk,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' tprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' l,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' l,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4114 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,Apld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' plicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44469 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44452 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo44452 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 1 warning generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blald: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' st+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47551 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo47551 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51322 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo51322 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lz' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthreald: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' d -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmeld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' r-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] unsigned int line_ctr = 0; ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lreld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' solv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServiceld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' s -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit', '-lvariation', '-lxalnmgr', '-lxcgi', '-lxconnect', '-lxconnext', '-lxhtml', '-lxlogging', '-lxncbi', '-lxobjread', '-lxser', '-lxutil', '-lz' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ork,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] int vol_ctr(0); ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -ld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServiceld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' s -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo54319 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] bool success = m_DB->EndBuild(); ^ 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=29C9A7F2-567B-4DE5-B3C5-3B61DD5D9A34 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeclusterdb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framewld: warning: -dylib_file is deprecated. Use -F or -L to control where indirect dylibs are found ld: warning: ignoring duplicate libraries: '-lpthread', '-lsubmit-static', '-lvariation-static', '-lxalnmgr-static', '-lxlogging-static', '-lxobjread-static', '-lz' ork,ApplicationServices -lpthread -o makeclusterdb strip makeclusterdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo93387 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7643 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'